HL_5NDK_107

3D structure

PDB id

5NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CUUUG

Length

5 nucleotides

Bulged bases

5NDK|1|1G|U|854

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NDK_107 not in the Motif Atlas

Homologous match to HL_4LFB_005

Geometric discrepancy: 0.264

The information below is about HL_4LFB_005

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.1

Basepair signature

cWW-F

Number of instances in this motif group

37

Unit IDs

5NDK|1|1G|C|853
5NDK|1|1G|U|854
5NDK|1|1G|U|855
5NDK|1|1G|U|856
5NDK|1|1G|G|857

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains