HL_5NDK_185
3D structure
- PDB id
- 5NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- GUGAAGAUGC
- Length
- 10 nucleotides
- Bulged bases
- 5NDK|1|1H|A|2055, 5NDK|1|1H|A|2056, 5NDK|1|1H|G|2057
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NDK_185 not in the Motif Atlas
- Homologous match to HL_7RQB_050
- Geometric discrepancy: 0.0598
- The information below is about HL_7RQB_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_90642.6
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
5NDK|1|1H|G|2052
5NDK|1|1H|U|2053
5NDK|1|1H|G|2054
5NDK|1|1H|A|2055
5NDK|1|1H|A|2056
5NDK|1|1H|G|2057
5NDK|1|1H|A|2058
5NDK|1|1H|U|2059
5NDK|1|1H|G|2060
5NDK|1|1H|C|2061
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain 21
- 50S ribosomal protein L3
- Chain D8
- 50S ribosomal protein L21
- Chain N8
- 50S ribosomal protein L32
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