HL_5NDK_237
3D structure
- PDB id
- 5NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- AUUGAAAAU
- Length
- 9 nucleotides
- Bulged bases
- 5NDK|1|V4|U|33
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NDK_237 not in the Motif Atlas
- Homologous match to HL_6UGG_005
- Geometric discrepancy: 0.2881
- The information below is about HL_6UGG_005
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_11974.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 16
Unit IDs
5NDK|1|V4|A|31
5NDK|1|V4|U|32
5NDK|1|V4|U|33
5NDK|1|V4|G|34
5NDK|1|V4|A|35
5NDK|1|V4|A|36
5NDK|1|V4|A|37
5NDK|1|V4|A|38
5NDK|1|V4|U|39
Current chains
- Chain V4
- tRNA-Phe
Nearby chains
- Chain 1G
- Small subunit ribosomal RNA; SSU rRNA
- Chain 2A
- 30S ribosomal protein S11
- Chain 62
- 30S ribosomal protein S7
- Chain X4
- Transfer RNA; tRNA
- Chain Y4
- mRNA
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