HL_5NDV_061

3D structure

PDB id

5NDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Paromomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NDV_061 not in the Motif Atlas

Homologous match to HL_8C3A_062

Geometric discrepancy: 0.1595

The information below is about HL_8C3A_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5NDV|1|1|C|2840
5NDV|1|1|G|2841
5NDV|1|1|U|2842
5NDV|1|1|U|2843
5NDV|1|1|C|2844
5NDV|1|1|A|2845
5NDV|1|1|U|2846
5NDV|1|1|A|2847
5NDV|1|1|G|2848

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain M0

60S ribosomal protein L10

Chain Q0

Ubiquitin-60S ribosomal protein L40