HL_5NDV_212

3D structure

PDB id

5NDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Paromomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

5NDV|1|6|U|1314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NDV_212 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.1355

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

5NDV|1|6|C|1309
5NDV|1|6|U|1310
5NDV|1|6|U|1311
5NDV|1|6|A|1312
5NDV|1|6|A|1313
5NDV|1|6|U|1314
5NDV|1|6|U|1315
5NDV|1|6|G|1316

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain c7

40S ribosomal protein S17-A

Chain s2

40S ribosomal protein S2