HL_5NDW_040
3D structure
- PDB id
- 5NDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- CGCAGCAG
- Length
- 8 nucleotides
- Bulged bases
- 5NDW|1|1|C|1846, 5NDW|1|1|G|1848, 5NDW|1|1|A|1850
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NDW_040 not in the Motif Atlas
- Homologous match to HL_8C3A_041
- Geometric discrepancy: 0.1043
- The information below is about HL_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56817.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
5NDW|1|1|C|1844
5NDW|1|1|G|1845
5NDW|1|1|C|1846
5NDW|1|1|A|1847
5NDW|1|1|G|1848
5NDW|1|1|C|1849
5NDW|1|1|A|1850
5NDW|1|1|G|1851
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain L4
- 60S ribosomal protein L4-A
- Chain M7
- 60S ribosomal protein L17-A
- Chain O7
- 60S ribosomal protein L37-A
- Chain O9
- 60S ribosomal protein L39
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