HL_8C3A_041

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGCAGCAG

Length

8 nucleotides

Bulged bases (A, C, G, U)

1842C, 1844G, 1846A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.3

Basepair signature

cWW-F-F

Number of instances in this motif group

13

Unit IDs

8C3A|1|1|C|1840
8C3A|1|1|G|1841
8C3A|1|1|C|1842
8C3A|1|1|A|1843
8C3A|1|1|G|1844
8C3A|1|1|C|1845
8C3A|1|1|A|1846
8C3A|1|1|G|1847

Current chains

Chain 1

25S

Nearby chains

Chain AK

60S ribosomal protein L37-B

Chain AM

60S ribosomal protein L39

Chain l

60S ribosomal protein L4-B

Chain x

Ribosomal protein L22