3D structure

PDB id
8C3A (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of ailanthone bound to the Candida albicans 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CGCAGCAG
Length
8 nucleotides
Bulged bases (A, C, G, U)
1842C, 1844G, 1846A
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_64430.3
Basepair signature
cWW-F-F
Number of instances in this motif group
13

Unit IDs

8C3A|1|1|C|1840
8C3A|1|1|G|1841
8C3A|1|1|C|1842
8C3A|1|1|A|1843
8C3A|1|1|G|1844
8C3A|1|1|C|1845
8C3A|1|1|A|1846
8C3A|1|1|G|1847

Current chains

Chain 1
25S

Nearby chains

Chain AK
60S ribosomal protein L37-B
Chain AM
60S ribosomal protein L39
Chain l
60S ribosomal protein L4-B
Chain x
Ribosomal protein L22

Coloring options:

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