HL_5NDW_100

3D structure

PDB id

5NDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

5NDW|1|2|U|1314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NDW_100 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.0897

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

5NDW|1|2|C|1309
5NDW|1|2|U|1310
5NDW|1|2|U|1311
5NDW|1|2|A|1312
5NDW|1|2|A|1313
5NDW|1|2|U|1314
5NDW|1|2|U|1315
5NDW|1|2|G|1316

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C7

40S ribosomal protein S17-A

Chain S2

40S ribosomal protein S2