HL_5NDW_133
3D structure
- PDB id
- 5NDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- ACGUGCAAAU
- Length
- 10 nucleotides
- Bulged bases
- 5NDW|1|5|U|879, 5NDW|1|5|A|883, 5NDW|1|5|A|884
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NDW_133 not in the Motif Atlas
- Homologous match to HL_5TBW_020
- Geometric discrepancy: 0.0869
- The information below is about HL_5TBW_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_39334.8
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 7
Unit IDs
5NDW|1|5|A|876
5NDW|1|5|C|877
5NDW|1|5|G|878
5NDW|1|5|U|879
5NDW|1|5|G|880
5NDW|1|5|C|881
5NDW|1|5|A|882
5NDW|1|5|A|883
5NDW|1|5|A|884
5NDW|1|5|U|885
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain l3
- 60S ribosomal protein L3
- Chain m7
- 60S ribosomal protein L17-A
- Chain o7
- 60S ribosomal protein L37-A
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