HL_5NDW_212
3D structure
- PDB id
- 5NDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- AUUGAGAGCU
- Length
- 10 nucleotides
- Bulged bases
- 5NDW|1|6|G|1243, 5NDW|1|6|G|1245
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NDW_212 not in the Motif Atlas
- Homologous match to HL_4V88_213
- Geometric discrepancy: 0.1909
- The information below is about HL_4V88_213
- Detailed Annotation
- Anticodon loop related
- Broad Annotation
- Anticodon loop related
- Motif group
- HL_27115.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 22
Unit IDs
5NDW|1|6|A|1238
5NDW|1|6|U|1239
5NDW|1|6|U|1240
5NDW|1|6|G|1241
5NDW|1|6|A|1242
5NDW|1|6|G|1243
5NDW|1|6|A|1244
5NDW|1|6|G|1245
5NDW|1|6|C|1246
5NDW|1|6|U|1247
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain c5
- 40S ribosomal protein S15
- Chain d9
- 40S ribosomal protein S29-A
- Chain e1
- Ubiquitin-40S ribosomal protein S31
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