HL_5NG8_081

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

AAGUAACUGU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NG8_081 not in the Motif Atlas

Geometric match to HL_4TUE_219

Geometric discrepancy: 0.3483

The information below is about HL_4TUE_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

5NG8|1|Aa|A|470
5NG8|1|Aa|A|471
5NG8|1|Aa|G|472
5NG8|1|Aa|U|473
5NG8|1|Aa|A|474
5NG8|1|Aa|A|475
5NG8|1|Aa|C|476
5NG8|1|Aa|U|477
5NG8|1|Aa|G|478
5NG8|1|Aa|U|479

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ap

30S ribosomal protein S16