HL_5NG8_084
3D structure
- PDB id
- 5NG8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.76 Å
Loop
- Sequence
- CGGUGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NG8_084 not in the Motif Atlas
- Geometric match to HL_4LFB_015
- Geometric discrepancy: 0.095
- The information below is about HL_4LFB_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
5NG8|1|Aa|C|697
5NG8|1|Aa|G|698
5NG8|1|Aa|G|699
5NG8|1|Aa|U|700
5NG8|1|Aa|G|701
5NG8|1|Aa|A|702
5NG8|1|Aa|A|703
5NG8|1|Aa|A|704
5NG8|1|Aa|U|705
5NG8|1|Aa|G|706
Current chains
- Chain Aa
- 16S ribosomal RNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain Ag
- 30S ribosomal protein S7
- Chain Ak
- 30S ribosomal protein S11
- Chain Au
- 30S ribosomal protein S21
- Chain Av
- Ribosome hibernation promotion factor
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