HL_5NG8_144

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GUUUAUCAAAAAC

Length

13 nucleotides

Bulged bases

5NG8|1|BA|A|1807, 5NG8|1|BA|U|1808, 5NG8|1|BA|C|1809, 5NG8|1|BA|A|1813

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NG8_144 not in the Motif Atlas

Geometric match to HL_7A0S_045

Geometric discrepancy: 0.1869

The information below is about HL_7A0S_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50951.1

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

5NG8|1|BA|G|1803
5NG8|1|BA|U|1804
5NG8|1|BA|U|1805
5NG8|1|BA|U|1806
5NG8|1|BA|A|1807
5NG8|1|BA|U|1808
5NG8|1|BA|C|1809
5NG8|1|BA|A|1810
5NG8|1|BA|A|1811
5NG8|1|BA|A|1812
5NG8|1|BA|A|1813
5NG8|1|BA|A|1814
5NG8|1|BA|C|1815

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain BC

50S ribosomal protein L2