HL_5NGM_008

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NGM_008 not in the Motif Atlas

Homologous match to HL_7A0S_008

Geometric discrepancy: 0.101

The information below is about HL_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76371.2

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

14

Unit IDs

5NGM|1|AA|C|249
5NGM|1|AA|G|250
5NGM|1|AA|G|251
5NGM|1|AA|C|252
5NGM|1|AA|G|253
5NGM|1|AA|A|254
5NGM|1|AA|G|255

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A3

50S ribosomal protein L35

Chain AJ

50S ribosomal protein L15

Chain AV

50S ribosomal protein L28