HL_5NGM_027

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAUAAGG

Length

8 nucleotides

Bulged bases

5NGM|1|AA|U|1002, 5NGM|1|AA|G|1005

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NGM_027 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.0944

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5NGM|1|AA|U|999
5NGM|1|AA|G|1000
5NGM|1|AA|A|1001
5NGM|1|AA|U|1002
5NGM|1|AA|A|1003
5NGM|1|AA|A|1004
5NGM|1|AA|G|1005
5NGM|1|AA|G|1006

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AB

5S ribosomal RNA; 5S rRNA

Chain AK

50S ribosomal protein L16