HL_5NGM_033

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCUCGUC

Length

7 nucleotides

Bulged bases

5NGM|1|AA|C|1362, 5NGM|1|AA|U|1366

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NGM_033 not in the Motif Atlas

Homologous match to HL_7RQB_034

Geometric discrepancy: 0.1083

The information below is about HL_7RQB_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46680.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

27

Unit IDs

5NGM|1|AA|G|1361
5NGM|1|AA|C|1362
5NGM|1|AA|U|1363
5NGM|1|AA|C|1364
5NGM|1|AA|G|1365
5NGM|1|AA|U|1366
5NGM|1|AA|C|1367

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AL

50S ribosomal protein L17

Chain AQ

50S ribosomal protein L22