HL_5NGM_035

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUGAUAUUC

Length

10 nucleotides

Bulged bases

5NGM|1|AA|U|1433, 5NGM|1|AA|U|1434

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NGM_035 not in the Motif Atlas

Homologous match to HL_4WF9_035

Geometric discrepancy: 0.1403

The information below is about HL_4WF9_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5NGM|1|AA|G|1426
5NGM|1|AA|U|1427
5NGM|1|AA|U|1428
5NGM|1|AA|G|1429
5NGM|1|AA|A|1430
5NGM|1|AA|U|1431
5NGM|1|AA|A|1432
5NGM|1|AA|U|1433
5NGM|1|AA|U|1434
5NGM|1|AA|C|1435

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AR

50S ribosomal protein L23