HL_5NGM_039
3D structure
- PDB id
- 5NGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9S structure of the 70S ribosome composing the S. aureus 100S complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AUGAGAAUU
- Length
- 9 nucleotides
- Bulged bases (A, C, G, U)
- 1678A
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NGM_039 not in the Motif Atlas
- Homologous match to HL_4WF9_039
- Geometric discrepancy: 0.0918
- The information below is about HL_4WF9_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_92229.2
- Basepair signature
- cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
5NGM|1|AA|A|1673
5NGM|1|AA|U|1674
5NGM|1|AA|G|1675
5NGM|1|AA|A|1676
5NGM|1|AA|G|1677
5NGM|1|AA|A|1678
5NGM|1|AA|A|1679
5NGM|1|AA|U|1680
5NGM|1|AA|U|1681
Current chains
- Chain AA
- 23S Ribosomal RNA
Nearby chains
No other chains within 10ÅColoring options: