HL_5NGM_039

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUGAGAAUU

Length

9 nucleotides

Bulged bases (A, C, G, U)

1678A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NGM_039 not in the Motif Atlas

Homologous match to HL_4WF9_039

Geometric discrepancy: 0.0918

The information below is about HL_4WF9_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92229.2

Basepair signature

cWW-cWW-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5NGM|1|AA|A|1673
5NGM|1|AA|U|1674
5NGM|1|AA|G|1675
5NGM|1|AA|A|1676
5NGM|1|AA|G|1677
5NGM|1|AA|A|1678
5NGM|1|AA|A|1679
5NGM|1|AA|U|1680
5NGM|1|AA|U|1681

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains