HL_5NGM_047

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

5NGM|1|AA|U|1982

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NGM_047 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.1021

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

5NGM|1|AA|G|1976
5NGM|1|AA|G|1977
5NGM|1|AA|U|1978
5NGM|1|AA|A|1979
5NGM|1|AA|A|1980
5NGM|1|AA|G|1981
5NGM|1|AA|U|1982
5NGM|1|AA|U|1983
5NGM|1|AA|C|1984

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AI

50S ribosomal protein L14

Chain Aa

Small subunit ribosomal RNA; SSU rRNA