HL_5NGM_052

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

5NGM|1|AA|A|2295, 5NGM|1|AA|C|2302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NGM_052 not in the Motif Atlas

Homologous match to HL_4WF9_050

Geometric discrepancy: 0.0811

The information below is about HL_4WF9_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

5NGM|1|AA|C|2291
5NGM|1|AA|U|2292
5NGM|1|AA|A|2293
5NGM|1|AA|A|2294
5NGM|1|AA|A|2295
5NGM|1|AA|A|2296
5NGM|1|AA|G|2297
5NGM|1|AA|G|2298
5NGM|1|AA|U|2299
5NGM|1|AA|A|2300
5NGM|1|AA|A|2301
5NGM|1|AA|C|2302
5NGM|1|AA|G|2303

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AK

50S ribosomal protein L16

Chain AU

50S ribosomal protein L27