HL_5NGM_056

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NGM_056 not in the Motif Atlas

Homologous match to HL_5J7L_191

Geometric discrepancy: 0.1107

The information below is about HL_5J7L_191

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5NGM|1|AA|C|2401
5NGM|1|AA|G|2402
5NGM|1|AA|A|2403
5NGM|1|AA|A|2404
5NGM|1|AA|A|2405
5NGM|1|AA|G|2406

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AM

50S ribosomal protein L18