HL_5NGM_057

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGCAUGGAAG

Length

10 nucleotides

Bulged bases

5NGM|1|AA|C|2433

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NGM_057 not in the Motif Atlas

Homologous match to HL_7A0S_058

Geometric discrepancy: 0.1245

The information below is about HL_7A0S_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

5NGM|1|AA|C|2431
5NGM|1|AA|G|2432
5NGM|1|AA|C|2433
5NGM|1|AA|A|2434
5NGM|1|AA|U|2435
5NGM|1|AA|G|2436
5NGM|1|AA|G|2437
5NGM|1|AA|A|2438
5NGM|1|AA|A|2439
5NGM|1|AA|G|2440

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AJ

50S ribosomal protein L15