HL_5NGM_059

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGUAGUCG

Length

8 nucleotides

Bulged bases

5NGM|1|AA|G|2556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NGM_059 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.154

The information below is about HL_5J7L_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

5NGM|1|AA|U|2555
5NGM|1|AA|G|2556
5NGM|1|AA|U|2557
5NGM|1|AA|A|2558
5NGM|1|AA|G|2559
5NGM|1|AA|U|2560
5NGM|1|AA|C|2561
5NGM|1|AA|G|2562

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A4

50S ribosomal protein L36

Chain AG

50S ribosomal protein L6