HL_5NGM_064

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

5NGM|1|AA|G|2778, 5NGM|1|AA|C|2782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NGM_064 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1069

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

5NGM|1|AA|C|2772
5NGM|1|AA|U|2773
5NGM|1|AA|G|2774
5NGM|1|AA|A|2775
5NGM|1|AA|A|2776
5NGM|1|AA|A|2777
5NGM|1|AA|G|2778
5NGM|1|AA|C|2779
5NGM|1|AA|A|2780
5NGM|1|AA|U|2781
5NGM|1|AA|C|2782
5NGM|1|AA|U|2783
5NGM|1|AA|A|2784
5NGM|1|AA|A|2785
5NGM|1|AA|G|2786

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A4

50S ribosomal protein L36

Chain AG

50S ribosomal protein L6

Chain AH

50S ribosomal protein L13