HL_5NGM_075

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

5NGM|1|Aa|G|274

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NGM_075 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.1579

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5NGM|1|Aa|G|267
5NGM|1|Aa|G|268
5NGM|1|Aa|U|269
5NGM|1|Aa|A|270
5NGM|1|Aa|A|271
5NGM|1|Aa|C|272
5NGM|1|Aa|G|273
5NGM|1|Aa|G|274
5NGM|1|Aa|C|275

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Aq

30S ribosomal protein S17

Chain At

30S ribosomal protein S20