HL_5NGM_077

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NGM_077 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.1518

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5NGM|1|Aa|A|328
5NGM|1|Aa|A|329
5NGM|1|Aa|C|330
5NGM|1|Aa|U|331
5NGM|1|Aa|G|332
5NGM|1|Aa|A|333
5NGM|1|Aa|G|334
5NGM|1|Aa|A|335
5NGM|1|Aa|C|336
5NGM|1|Aa|A|337
5NGM|1|Aa|C|338
5NGM|1|Aa|G|339
5NGM|1|Aa|G|340
5NGM|1|Aa|U|341

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ap

30S ribosomal protein S16

Chain At

30S ribosomal protein S20