HL_5NGM_079

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCGAAAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NGM_079 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3609

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5NGM|1|Aa|G|386
5NGM|1|Aa|C|387
5NGM|1|Aa|G|388
5NGM|1|Aa|A|389
5NGM|1|Aa|A|390
5NGM|1|Aa|A|391
5NGM|1|Aa|G|392
5NGM|1|Aa|C|393

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ap

30S ribosomal protein S16