HL_5NGM_083

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NGM_083 not in the Motif Atlas

Homologous match to HL_4LFB_014

Geometric discrepancy: 0.1923

The information below is about HL_4LFB_014

Detailed Annotation

GNRA-like with tWH

Broad Annotation

GNRA

Motif group

HL_92337.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

3

Unit IDs

5NGM|1|Aa|G|625
5NGM|1|Aa|C|626
5NGM|1|Aa|U|627
5NGM|1|Aa|C|628
5NGM|1|Aa|A|629
5NGM|1|Aa|A|630
5NGM|1|Aa|C|631

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ad

30S ribosomal protein S4

Chain Ap

30S ribosomal protein S16