HL_5NGM_088

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUAACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NGM_088 not in the Motif Atlas

Homologous match to HL_5J7L_019

Geometric discrepancy: 0.0974

The information below is about HL_5J7L_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5NGM|1|Aa|C|871
5NGM|1|Aa|U|872
5NGM|1|Aa|A|873
5NGM|1|Aa|A|874
5NGM|1|Aa|C|875
5NGM|1|Aa|G|876

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ae

30S ribosomal protein S5

Chain Ah

30S ribosomal protein S8