HL_5NGM_090

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAGCAACGC

Length

10 nucleotides

Bulged bases

5NGM|1|Aa|G|980

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NGM_090 not in the Motif Atlas

Homologous match to HL_4LFB_021

Geometric discrepancy: 0.2604

The information below is about HL_4LFB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5NGM|1|Aa|G|972
5NGM|1|Aa|A|973
5NGM|1|Aa|A|974
5NGM|1|Aa|G|975
5NGM|1|Aa|C|976
5NGM|1|Aa|A|977
5NGM|1|Aa|A|978
5NGM|1|Aa|C|979
5NGM|1|Aa|G|980
5NGM|1|Aa|C|981

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ai

30S ribosomal protein S9

Chain Aj

30S ribosomal protein S10

Chain An

30S ribosomal protein S14 type Z

Chain Av

Ribosome hibernation promoting factor