HL_5NGM_099

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAUCAGCAUGC

Length

11 nucleotides

Bulged bases (A, C, G, U)

1374U

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NGM_099 not in the Motif Atlas

Homologous match to HL_4LFB_030

Geometric discrepancy: 0.1408

The information below is about HL_4LFB_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96366.1

Basepair signature

cWW-cWW-tWW-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5NGM|1|Aa|G|1366
5NGM|1|Aa|A|1367
5NGM|1|Aa|U|1368
5NGM|1|Aa|C|1369
5NGM|1|Aa|A|1370
5NGM|1|Aa|G|1371
5NGM|1|Aa|C|1372
5NGM|1|Aa|A|1373
5NGM|1|Aa|U|1374
5NGM|1|Aa|G|1375
5NGM|1|Aa|C|1376

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ai

30S ribosomal protein S9

Chain Aj

30S ribosomal protein S10

Chain An

30S ribosomal protein S14 type Z