HL_5NGM_099
3D structure
- PDB id
- 5NGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9S structure of the 70S ribosome composing the S. aureus 100S complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAUCAGCAUGC
- Length
- 11 nucleotides
- Bulged bases (A, C, G, U)
- 1374U
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NGM_099 not in the Motif Atlas
- Homologous match to HL_4LFB_030
- Geometric discrepancy: 0.1408
- The information below is about HL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_96366.1
- Basepair signature
- cWW-cWW-tWW-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
5NGM|1|Aa|G|1366
5NGM|1|Aa|A|1367
5NGM|1|Aa|U|1368
5NGM|1|Aa|C|1369
5NGM|1|Aa|A|1370
5NGM|1|Aa|G|1371
5NGM|1|Aa|C|1372
5NGM|1|Aa|A|1373
5NGM|1|Aa|U|1374
5NGM|1|Aa|G|1375
5NGM|1|Aa|C|1376
Current chains
- Chain Aa
- 16S ribosomal RNA
Nearby chains
- Chain Ai
- 30S ribosomal protein S9
- Chain Aj
- 30S ribosomal protein S10
- Chain An
- 30S ribosomal protein S14 type Z
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