HL_5NGM_100

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUUUAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NGM_100 not in the Motif Atlas

Geometric match to HL_5TBW_012

Geometric discrepancy: 0.3665

The information below is about HL_5TBW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

5NGM|1|Aa|C|1459
5NGM|1|Aa|U|1460
5NGM|1|Aa|U|1461
5NGM|1|Aa|U|1462
5NGM|1|Aa|U|1463
5NGM|1|Aa|A|1464
5NGM|1|Aa|G|1465

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains