HL_5NGM_107
3D structure
- PDB id
- 5NGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9S structure of the 70S ribosome composing the S. aureus 100S complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUCCCAUGCCGAACA
- Length
- 15 nucleotides
- Bulged bases
- 5NGM|1|AB|G|39
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NGM_107 not in the Motif Atlas
- Homologous match to HL_9DFE_067
- Geometric discrepancy: 0.1552
- The information below is about HL_9DFE_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97756.2
- Basepair signature
- cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
5NGM|1|AB|U|32
5NGM|1|AB|U|33
5NGM|1|AB|C|34
5NGM|1|AB|C|35
5NGM|1|AB|C|36
5NGM|1|AB|A|37
5NGM|1|AB|U|38
5NGM|1|AB|G|39
5NGM|1|AB|C|40
5NGM|1|AB|C|41
5NGM|1|AB|G|42
5NGM|1|AB|A|43
5NGM|1|AB|A|44
5NGM|1|AB|C|45
5NGM|1|AB|A|46
Current chains
- Chain AB
- 5S Ribosomal RNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain AF
- 50S ribosomal protein L5
- Chain AM
- 50S ribosomal protein L18
- Chain AY
- 50S ribosomal protein L31 type B
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