HL_5NGM_108

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUUCCG

Length

6 nucleotides

Bulged bases

5NGM|1|Aa|C|852, 5NGM|1|Aa|C|853

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NGM_108 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3137

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

5NGM|1|Aa|U|849
5NGM|1|Aa|U|850
5NGM|1|Aa|U|851
5NGM|1|Aa|C|852
5NGM|1|Aa|C|853
5NGM|1|Aa|G|854

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ar

30S ribosomal protein S18