HL_5NJT_012

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

5NJT|1|A|U|476

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NJT_012 not in the Motif Atlas

Geometric match to HL_3DIL_003

Geometric discrepancy: 0.2209

The information below is about HL_3DIL_003

Detailed Annotation

GNRA

Broad Annotation

GNRA

Motif group

HL_48677.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

24

Unit IDs

5NJT|1|A|C|472
5NJT|1|A|G|473
5NJT|1|A|A|474
5NJT|1|A|A|475
5NJT|1|A|U|476
5NJT|1|A|A|477
5NJT|1|A|G|478

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16