HL_5NJT_021
3D structure
- PDB id
- 5NJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GAAGCAACGC
- Length
- 10 nucleotides
- Bulged bases
- 5NJT|1|A|G|981
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NJT_021 not in the Motif Atlas
- Homologous match to HL_4LFB_021
- Geometric discrepancy: 0.2625
- The information below is about HL_4LFB_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97521.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5NJT|1|A|G|973
5NJT|1|A|A|974
5NJT|1|A|A|975
5NJT|1|A|G|976
5NJT|1|A|C|977
5NJT|1|A|A|978
5NJT|1|A|A|979
5NJT|1|A|C|980
5NJT|1|A|G|981
5NJT|1|A|C|982
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain I
- 30S ribosomal protein S9
- Chain J
- 30S ribosomal protein S10
- Chain x
- Ribosome hibernation promotion factor
Coloring options: