HL_5NJT_033

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGUAAGCAA

Length

9 nucleotides

Bulged bases

5NJT|1|U|A|91

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NJT_033 not in the Motif Atlas

Homologous match to HL_4WF9_002

Geometric discrepancy: 0.5244

The information below is about HL_4WF9_002

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_00911.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

5NJT|1|U|U|87
5NJT|1|U|G|88
5NJT|1|U|U|89
5NJT|1|U|A|90
5NJT|1|U|A|91
5NJT|1|U|G|92
5NJT|1|U|C|93
5NJT|1|U|A|94
5NJT|1|U|A|95

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain n

50S ribosomal protein L24

Chain v

50S ribosomal protein L29