HL_5NJT_035

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGUAAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NJT_035 not in the Motif Atlas

Homologous match to HL_4WF9_004

Geometric discrepancy: 0.2527

The information below is about HL_4WF9_004

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5NJT|1|U|C|136
5NJT|1|U|G|137
5NJT|1|U|U|138
5NJT|1|U|A|139
5NJT|1|U|A|140
5NJT|1|U|U|141
5NJT|1|U|G|142
5NJT|1|U|G|143

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain m

50S ribosomal protein L23

Chain v

50S ribosomal protein L29