HL_5NJT_045

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

5NJT|1|U|G|458

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NJT_045 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.0967

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5NJT|1|U|G|457
5NJT|1|U|G|458
5NJT|1|U|A|459
5NJT|1|U|C|460
5NJT|1|U|C|461
5NJT|1|U|A|462
5NJT|1|U|U|463
5NJT|1|U|C|464

Current chains

Chain U

23S ribosomal RNA

Nearby chains