HL_5NJT_050

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGAAGAU

Length

7 nucleotides

Bulged bases

5NJT|1|U|A|659

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NJT_050 not in the Motif Atlas

Geometric match to HL_5J7L_179

Geometric discrepancy: 0.2699

The information below is about HL_5J7L_179

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

5NJT|1|U|A|656
5NJT|1|U|G|657
5NJT|1|U|A|658
5NJT|1|U|A|659
5NJT|1|U|G|660
5NJT|1|U|A|661
5NJT|1|U|U|662

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain Y

50S ribosomal protein L4