HL_5NJT_058

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAUAAGA

Length

8 nucleotides

Bulged bases

5NJT|1|U|U|1004, 5NJT|1|U|G|1007

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NJT_058 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.1726

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

5NJT|1|U|U|1001
5NJT|1|U|G|1002
5NJT|1|U|A|1003
5NJT|1|U|U|1004
5NJT|1|U|A|1005
5NJT|1|U|A|1006
5NJT|1|U|G|1007
5NJT|1|U|A|1008

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain V

5S ribosomal RNA; 5S rRNA

Chain f

50S ribosomal protein L16