HL_5NJT_062

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUCG

Length

5 nucleotides

Bulged bases

5NJT|1|U|U|1218, 5NJT|1|U|C|1219

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NJT_062 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.3409

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

5NJT|1|U|C|1216
5NJT|1|U|U|1217
5NJT|1|U|U|1218
5NJT|1|U|C|1219
5NJT|1|U|G|1220

Current chains

Chain U

23S ribosomal RNA

Nearby chains