HL_5NJT_066

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NJT_066 not in the Motif Atlas

Homologous match to HL_7RQB_035

Geometric discrepancy: 0.1628

The information below is about HL_7RQB_035

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_87030.2

Basepair signature

cWW-F-F

Number of instances in this motif group

33

Unit IDs

5NJT|1|U|C|1402
5NJT|1|U|G|1403
5NJT|1|U|A|1404
5NJT|1|U|A|1405
5NJT|1|U|A|1406
5NJT|1|U|G|1407

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain r

50S ribosomal protein L34

Chain u

50S ribosomal protein L28