HL_5NJT_067

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUUGAUAUUC

Length

10 nucleotides

Bulged bases

5NJT|1|U|G|1431, 5NJT|1|U|U|1435

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NJT_067 not in the Motif Atlas

Homologous match to HL_4WF9_035

Geometric discrepancy: 0.2274

The information below is about HL_4WF9_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

14

Unit IDs

5NJT|1|U|G|1428
5NJT|1|U|U|1429
5NJT|1|U|U|1430
5NJT|1|U|G|1431
5NJT|1|U|A|1432
5NJT|1|U|U|1433
5NJT|1|U|A|1434
5NJT|1|U|U|1435
5NJT|1|U|U|1436
5NJT|1|U|C|1437

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain m

50S ribosomal protein L23