HL_5NJT_075

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NJT_075 not in the Motif Atlas

Homologous match to HL_7RQB_043

Geometric discrepancy: 0.4723

The information below is about HL_7RQB_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43656.2

Basepair signature

cWW-tSH

Number of instances in this motif group

8

Unit IDs

5NJT|1|U|U|1764
5NJT|1|U|G|1765
5NJT|1|U|C|1766
5NJT|1|U|A|1767
5NJT|1|U|A|1768
5NJT|1|U|G|1769

Current chains

Chain U

23S ribosomal RNA

Nearby chains