HL_5NJT_077
3D structure
- PDB id
- 5NJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UUUAGCAAAAA
- Length
- 11 nucleotides
- Bulged bases
- 5NJT|1|U|A|1809, 5NJT|1|U|G|1810, 5NJT|1|U|C|1811, 5NJT|1|U|A|1813, 5NJT|1|U|A|1815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NJT_077 not in the Motif Atlas
- Homologous match to HL_5J7L_178
- Geometric discrepancy: 0.2306
- The information below is about HL_5J7L_178
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01962.2
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
5NJT|1|U|U|1806
5NJT|1|U|U|1807
5NJT|1|U|U|1808
5NJT|1|U|A|1809
5NJT|1|U|G|1810
5NJT|1|U|C|1811
5NJT|1|U|A|1812
5NJT|1|U|A|1813
5NJT|1|U|A|1814
5NJT|1|U|A|1815
5NJT|1|U|A|1816
Current chains
- Chain U
- 23S ribosomal RNA
Nearby chains
- Chain W
- 50S ribosomal protein L2
- Chain r
- 50S ribosomal protein L34
Coloring options: