HL_5NJT_080

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

5NJT|1|U|A|1942

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NJT_080 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.251

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5NJT|1|U|G|1939
5NJT|1|U|U|1940
5NJT|1|U|A|1941
5NJT|1|U|A|1942
5NJT|1|U|C|1943
5NJT|1|U|U|1944
5NJT|1|U|A|1945
5NJT|1|U|U|1946
5NJT|1|U|A|1947
5NJT|1|U|A|1948
5NJT|1|U|C|1949

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain x

Ribosome hibernation promotion factor