HL_5NJT_086

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

5NJT|1|U|A|2297, 5NJT|1|U|C|2304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NJT_086 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.1644

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

5NJT|1|U|C|2293
5NJT|1|U|U|2294
5NJT|1|U|A|2295
5NJT|1|U|A|2296
5NJT|1|U|A|2297
5NJT|1|U|A|2298
5NJT|1|U|G|2299
5NJT|1|U|G|2300
5NJT|1|U|U|2301
5NJT|1|U|A|2302
5NJT|1|U|A|2303
5NJT|1|U|C|2304
5NJT|1|U|G|2305

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain f

50S ribosomal protein L16

Chain o

50S ribosomal protein L27