HL_5NJT_088

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGUAAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NJT_088 not in the Motif Atlas

Homologous match to HL_5J7L_189

Geometric discrepancy: 0.2061

The information below is about HL_5J7L_189

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

5NJT|1|U|U|2353
5NJT|1|U|G|2354
5NJT|1|U|U|2355
5NJT|1|U|A|2356
5NJT|1|U|A|2357
5NJT|1|U|A|2358
5NJT|1|U|G|2359
5NJT|1|U|G|2360

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain f

50S ribosomal protein L16

Chain o

50S ribosomal protein L27