HL_5NJT_092

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGUCCACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NJT_092 not in the Motif Atlas

Homologous match to HL_7A0S_059

Geometric discrepancy: 0.2851

The information below is about HL_7A0S_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

5NJT|1|U|A|2500
5NJT|1|U|G|2501
5NJT|1|U|U|2502
5NJT|1|U|C|2503
5NJT|1|U|C|2504
5NJT|1|U|A|2505
5NJT|1|U|C|2506
5NJT|1|U|A|2507
5NJT|1|U|U|2508

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L6

Chain f

50S ribosomal protein L16

Chain t

50S ribosomal protein L36